BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB002G04SP1|AL425014
(646 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1530 728 0.0
3x_Contig66 378 e-105
>3x_Contig1530
Length = 6216
Score = 728 bits (356), Expect = 0.0
Identities = 578/646 (89%), Gaps = 27/646 (4%)
Strand = Plus / Minus
Query: 1 agctccgctctaattgaataagtaatagaaactataaagagatagtggtatwtcacctag 60
||||||||| ||||||||||||||| ||||||||||||| ||||||||| |||| |
Sbjct: 4568 agctccgct-taattgaataagtaa-agaaactataaagg--tagtggtatttcact--g 4515
Query: 61 gcgccgaagctcccacttctgctcacaaccctctaatgtctactkcacaatgtcacatac 120
|||||||||||||||||| |||| ||| ||||||| ||||| || |||||||||| | |
Sbjct: 4514 gcgccgaagctcccacttatgct-aca-ccctcta-tgtct-cttcacaatgtcaaa--c 4461
Query: 121 tagagatcaagctcaacaggggcwcktctttccccgctgaktctsccaagcctctcgttc 180
||||| ||||||||||||||| | |||||||||||||| ||| ||||||| |||||
Sbjct: 4460 tagag-tcaagctcaacaggg--tcttctttccccgctgattctgccaagcc---cgttc 4407
Query: 181 accttggmtgtggkttcgcwagawartagaaarggacagtgggaatctcgttaatccawt 240
|||||| ||||| ||||| ||| | |||| | ||||||||||||||||||||||||| |
Sbjct: 4406 -ccttggctgtggtttcgctagatagtagatagggacagtgggaatctcgttaatccatt 4348
Query: 241 catgcagcagtgcactaattagakgcacgaggcattatggctaccttaarasagttatag 300
||||| || || ||||||||||| | |||||||||| |||||||||||| | ||| ||||
Sbjct: 4347 catgc-gc-gt-cactaattagatg-acgaggcatt-tggctaccttaagagagtcatag 4293
Query: 301 twactcccgccgkttacccgcgcytggttsamtttcytcactttgacattcagagcactg 360
| |||||||||| |||||||||| ||||| | |||| |||||||||||||||||||||||
Sbjct: 4292 ttactcccgccgtttacccgcgcttggttgaatttcttcactttgacattcagagcactg 4233
Query: 361 ggcagaaatcacattscgtcaacatcactttctgaccatcgcaatgctatgttttaatta 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4232 ggcagaaatcacattgcgtcaacatcactttctgaccatcgcaatgctatgttttaatta 4173
Query: 421 gcacagtcagcawtccccttgtcgcgtaccagtactaagtcgaycgtkaaktgcagcaag 480
| |||||||| | |||||||||| ||||||||| |||||| || ||| || |||||||||
Sbjct: 4172 g-acagtcag-attccccttgtc-cgtaccagttctaagttgatcgttaattgcagcaag 4116
Query: 481 cgacggtctacaagagacctaccaargccgtctacgacaaggcccgcaagccgtccgtcc 540
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 4115 cgacggtctacaagagacctaccaaggccgtctacgacaaggcccgcaagcagtccgtcc 4056
Query: 541 caccgascaagcccagtaagacagttcacaagcatgcccgccgcgtctgaacaaggccct 600
|||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 4055 caccgagcaagcccagtaagacagtccacaagcatgcccgccgcgtctgaccaaggccct 3996
Query: 601 cactgcccgakccttagagccaatccttatcccgaagttacggatc 646
|||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3995 cactgcccgatccttagagccaatccttatcccgaagttacggatc 3950
>3x_Contig66
Length = 1023
Score = 378 bits (185), Expect = e-105
Identities = 230/247 (93%), Gaps = 2/247 (0%)
Strand = Plus / Plus
Query: 400 cgcaatgctatgttttaattagcacagtcagcawtccccttgtcgcgtaccagtactaag 459
|||||||||||||||||||||| |||||||| | |||||||| ||||||||| |||||
Sbjct: 4 cgcaatgctatgttttaattag-acagtcag-attccccttggtccgtaccagttctaag 61
Query: 460 tcgaycgtkaaktgcagcaagcgacggtctacaagagacctaccaargccgtctacgaca 519
| || ||| || |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 62 ttgatcgttaattgcagcaagcgacggtctacaagagacctaccaaggccgtctacgaca 121
Query: 520 aggcccgcaagccgtccgtcccaccgascaagcccagtaagacagttcacaagcatgccc 579
|||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 122 aggcccgcaagcagtccgtcccaccgagcaagcccagtaagacagtccacaagcatgccc 181
Query: 580 gccgcgtctgaacaaggccctcactgcccgakccttagagccaatccttatcccgaagtt 639
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 182 gccgcgtctgaccaaggccctcactgcccgatccttagagccaatccttatcccgaagtt 241
Query: 640 acggatc 646
|||||||
Sbjct: 242 acggatc 248
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.42 0.717 1.34
Gapped
Lambda K H
1.42 0.717 1.34
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1445
Number of Sequences: 1807
Number of extensions: 1445
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 2
length of query: 646
length of database: 10,358,551
effective HSP length: 16
effective length of query: 630
effective length of database: 10,329,639
effective search space: 6507672570
effective search space used: 6507672570
T: 0
A: 40
X1: 5 (10.2 bits)
X2: 14 (28.6 bits)
S1: 11 (23.0 bits)
S2: 49 (100.7 bits)